Alan Rogers's Source Code

Last update: Thu Jun 19 10:12:29 MDT 2008

Package directory

arrpp-0_10.tgz gtree-1_5.tgz mismatch2b.tgz
covld.tgz gtreec-0_33.tgz poco-0_45.tgz

Package descriptions

arrpp-0_10.tgz 2009-03-30 14:18:52 C++ classes for reading formatted input, for matrices,   and for a few enhancements to the Boost random number package. [file]
covld.tgz 2008-06-19 10:01:03 Python code relating to "Linkage Disequilibrium in Loci   with Unknown Phase", by Alan R. Rogers and Chad Huff. [file]
gtree-1_5.tgz 2005-11-02 13:59:28 C++ classes for use in population genetics. Includes   classes representing gene genealogies, and metapopulations. Requires arrpp. There are substantial changes in the code for epochs of population history. There is now an abstract class EpochBase from which other types of epoch are derived. Concrete epochs include IslandModelEpoch and SteppingStoneEpoch. [file]
gtreec-0_33.tgz 2005-11-02 14:20:08 Object-oriented library, written in C, for use in   population genetics. Includes types representing gene genealogies and metapopulations, along with functions that manipulate them. Implements a version of the coalescent algorithm for structured populations, and population histories that comprise several epochs. Requires poco. [file]
mismatch2b.tgz 2004-07-24 07:28:29 Mismatch analysis. This package of programs dates from   roughly 1993 and needs to be updated. [file]
poco-0_45.tgz 2005-11-02 14:22:48 Polymorphic containers in C. Package includes   vectors, lists, and binary trees. Inspired by the standard template library of C++. Release 0_42 changes the calling syntax of several NdxLbl functions and of BinTree_insert. Release 0_43 fixes two bugs: poco_estrdup no longer crashes when handed a null pointer, and poco_emalloc now returns null (rather than aborting) in response to a request for 0 bytes of memory. [file]